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This is different than saying you have gut issues like diarrhea, constipation, reflux and so on. It could be from foods, but it could be other things too.
Have you done stool testing? This would be the best way to see what's going on with your gut. You also have ACAT which can affect the gut, cause kidney stones, etc.
I have gut issues--but since I have no gallbladder, it's so hard to pinpoint from moment to moment what's causing what. I haven't had stool testing but it sounds like a good idea.